**/target/**
target/**
*.code-workspace
tmp*
temp*
# The `temp*` glob above matches `templates/` too; keep the Train-FIRE workflow templates dir tracked.
!Train-FIRE/workflow/templates/
!Train-FIRE/workflow/templates/**
dists/**
.vscode/
.test/small_unaligned_fiberseq.bam
Gemfile*
_site/*
models/backups/*
get_json.sh
src/model
.devcontainer/**
issue_data/**
flamegraph*
tests/data/chr20*bam*
hub.txt
*test.bam*
py-ft/Cargo.lock
py-ft/test.html
py-ft/test.py
py-ft/test.tbl
tests/data/shuffle.chr20.hifi.bed.gz
benchmarks/2025-07-08-new-torch-version/bin/
local-test-files/
pg-test-data/
.snakemake/
.claude/
results/*
Train-FIRE/results/* 
Train-FIRE/pixi.toml
temp/** 
scripts/*
pixi.lock
Train-FIRE/GM12878-fire-v0.1-filtered.cram.crai

# Benchmark dataset fetched by benches/fetch-data.sh (not vendored in-repo)
benches/data/

# Criterion baseline / measurement storage (redundant with target/ but explicit)
target/criterion/
profile.json.gz
